NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,658.6 |
Mean read quality |
41.2 |
Median read length |
2,723.0 |
Median read quality |
36.2 |
Number of reads |
2,343.0 |
Read length N50 |
2,723.0 |
STDEV read length |
333.7 |
Total bases |
6,229,052.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
2343 (100.0%) 6.2Mb |
>Q7 |
2343 (100.0%) 6.2Mb |
>Q10 |
2343 (100.0%) 6.2Mb |
>Q12 |
2343 (100.0%) 6.2Mb |
>Q15 |
2343 (100.0%) 6.2Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2724) |
2 |
93.0 (2723) |
3 |
93.0 (2722) |
4 |
93.0 (2722) |
5 |
93.0 (2397) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5432 (20.9) |
2 |
5425 (35.9) |
3 |
5424 (32.8) |
4 |
5423 (37.0) |
5 |
5422 (66.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation