NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,546.0 |
Mean read quality |
44.3 |
Median read length |
2,525.0 |
Median read quality |
36.9 |
Number of reads |
5,717.0 |
Read length N50 |
2,558.0 |
STDEV read length |
160.5 |
Total bases |
14,555,758.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
5717 (100.0%) 14.6Mb |
>Q7 |
5717 (100.0%) 14.6Mb |
>Q10 |
5717 (100.0%) 14.6Mb |
>Q12 |
5717 (100.0%) 14.6Mb |
>Q15 |
5717 (100.0%) 14.6Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2399) |
2 |
93.0 (2361) |
3 |
93.0 (2723) |
4 |
93.0 (2608) |
5 |
93.0 (2270) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2800 (22.2) |
2 |
2799 (30.3) |
3 |
2799 (31.3) |
4 |
2798 (33.9) |
5 |
2797 (24.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation