NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,521.1 |
Mean read quality |
44.6 |
Median read length |
2,523.0 |
Median read quality |
37.0 |
Number of reads |
6,196.0 |
Read length N50 |
2,560.0 |
STDEV read length |
357.4 |
Total bases |
15,620,668.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
6196 (100.0%) 15.6Mb |
>Q7 |
6196 (100.0%) 15.6Mb |
>Q10 |
6196 (100.0%) 15.6Mb |
>Q12 |
6196 (100.0%) 15.6Mb |
>Q15 |
6196 (100.0%) 15.6Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (718) |
2 |
93.0 (2337) |
3 |
93.0 (2523) |
4 |
93.0 (2388) |
5 |
93.0 (2427) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5815 (32.8) |
2 |
5461 (25.8) |
3 |
5436 (27.8) |
4 |
5434 (27.5) |
5 |
5433 (40.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation