NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 2,521.1
Mean read quality 44.6
Median read length 2,523.0
Median read quality 37.0
Number of reads 6,196.0
Read length N50 2,560.0
STDEV read length 357.4
Total bases 15,620,668.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 6196 (100.0%) 15.6Mb
>Q7 6196 (100.0%) 15.6Mb
>Q10 6196 (100.0%) 15.6Mb
>Q12 6196 (100.0%) 15.6Mb
>Q15 6196 (100.0%) 15.6Mb
Top 5 highest mean basecall quality scores and their read lengths
1 93.0 (718)
2 93.0 (2337)
3 93.0 (2523)
4 93.0 (2388)
5 93.0 (2427)
Top 5 longest reads and their mean basecall quality score
1 5815 (32.8)
2 5461 (25.8)
3 5436 (27.8)
4 5434 (27.5)
5 5433 (40.2)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality plot using a kernel density estimation