NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,660.5 |
Mean read quality |
40.5 |
Median read length |
2,723.0 |
Median read quality |
36.0 |
Number of reads |
3,184.0 |
Read length N50 |
2,723.0 |
STDEV read length |
134.7 |
Total bases |
8,470,893.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
3184 (100.0%) 8.5Mb |
>Q7 |
3184 (100.0%) 8.5Mb |
>Q10 |
3184 (100.0%) 8.5Mb |
>Q12 |
3184 (100.0%) 8.5Mb |
>Q15 |
3184 (100.0%) 8.5Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2717) |
2 |
93.0 (2720) |
3 |
93.0 (2723) |
4 |
93.0 (2388) |
5 |
93.0 (2723) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2782 (24.6) |
2 |
2776 (39.3) |
3 |
2776 (20.2) |
4 |
2774 (62.5) |
5 |
2773 (26.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation