NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,626.8 |
Mean read quality |
40.9 |
Median read length |
2,723.0 |
Median read quality |
36.1 |
Number of reads |
3,387.0 |
Read length N50 |
2,723.0 |
STDEV read length |
323.4 |
Total bases |
8,896,887.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
3387 (100.0%) 8.9Mb |
>Q7 |
3387 (100.0%) 8.9Mb |
>Q10 |
3387 (100.0%) 8.9Mb |
>Q12 |
3387 (100.0%) 8.9Mb |
>Q15 |
3387 (100.0%) 8.9Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2426) |
2 |
93.0 (2408) |
3 |
93.0 (2271) |
4 |
93.0 (2374) |
5 |
93.0 (2718) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5471 (23.8) |
2 |
5458 (20.6) |
3 |
5453 (22.3) |
4 |
5433 (35.5) |
5 |
5402 (30.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation