NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,429.2 |
Mean read quality |
38.4 |
Median read length |
2,391.0 |
Median read quality |
34.1 |
Number of reads |
8,451.0 |
Read length N50 |
2,392.0 |
STDEV read length |
148.7 |
Total bases |
20,529,336.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
8451 (100.0%) 20.5Mb |
>Q7 |
8451 (100.0%) 20.5Mb |
>Q10 |
8451 (100.0%) 20.5Mb |
>Q12 |
8451 (100.0%) 20.5Mb |
>Q15 |
8451 (100.0%) 20.5Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2584) |
2 |
93.0 (2490) |
3 |
93.0 (2265) |
4 |
93.0 (2309) |
5 |
93.0 (2270) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2791 (27.6) |
2 |
2789 (65.3) |
3 |
2781 (25.5) |
4 |
2779 (21.8) |
5 |
2776 (20.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation