NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,380.2 |
Mean read quality |
39.2 |
Median read length |
2,390.0 |
Median read quality |
34.3 |
Number of reads |
9,220.0 |
Read length N50 |
2,391.0 |
STDEV read length |
334.5 |
Total bases |
21,945,037.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
9220 (100.0%) 21.9Mb |
>Q7 |
9220 (100.0%) 21.9Mb |
>Q10 |
9220 (100.0%) 21.9Mb |
>Q12 |
9220 (100.0%) 21.9Mb |
>Q15 |
9220 (100.0%) 21.9Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2387) |
2 |
93.0 (2501) |
3 |
93.0 (2101) |
4 |
93.0 (2723) |
5 |
93.0 (2723) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
6881 (32.1) |
2 |
5365 (20.1) |
3 |
4971 (25.5) |
4 |
4851 (30.8) |
5 |
4825 (21.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation