NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,601.7 |
Mean read quality |
40.1 |
Median read length |
2,714.0 |
Median read quality |
35.1 |
Number of reads |
5,491.0 |
Read length N50 |
2,718.0 |
STDEV read length |
146.6 |
Total bases |
14,285,752.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
5491 (100.0%) 14.3Mb |
>Q7 |
5491 (100.0%) 14.3Mb |
>Q10 |
5491 (100.0%) 14.3Mb |
>Q12 |
5491 (100.0%) 14.3Mb |
>Q15 |
5491 (100.0%) 14.3Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2426) |
2 |
93.0 (2418) |
3 |
93.0 (2418) |
4 |
93.0 (2723) |
5 |
93.0 (2723) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2789 (25.9) |
2 |
2785 (26.0) |
3 |
2779 (20.2) |
4 |
2773 (67.3) |
5 |
2766 (28.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation