NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,563.3 |
Mean read quality |
40.7 |
Median read length |
2,696.0 |
Median read quality |
35.3 |
Number of reads |
6,003.0 |
Read length N50 |
2,718.0 |
STDEV read length |
347.2 |
Total bases |
15,387,413.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
6003 (100.0%) 15.4Mb |
>Q7 |
6003 (100.0%) 15.4Mb |
>Q10 |
6003 (100.0%) 15.4Mb |
>Q12 |
6003 (100.0%) 15.4Mb |
>Q15 |
6003 (100.0%) 15.4Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2361) |
2 |
93.0 (2723) |
3 |
93.0 (2723) |
4 |
93.0 (1763) |
5 |
93.0 (1819) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5485 (26.0) |
2 |
5469 (23.7) |
3 |
5426 (39.8) |
4 |
5418 (33.1) |
5 |
5146 (36.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation