NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,510.1 |
Mean read quality |
39.0 |
Median read length |
2,517.0 |
Median read quality |
34.1 |
Number of reads |
3,502.0 |
Read length N50 |
2,520.0 |
STDEV read length |
121.3 |
Total bases |
8,790,286.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
3502 (100.0%) 8.8Mb |
>Q7 |
3502 (100.0%) 8.8Mb |
>Q10 |
3502 (100.0%) 8.8Mb |
>Q12 |
3502 (100.0%) 8.8Mb |
>Q15 |
3502 (100.0%) 8.8Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2416) |
2 |
93.0 (2567) |
3 |
93.0 (2426) |
4 |
93.0 (2268) |
5 |
93.0 (2614) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2800 (57.4) |
2 |
2800 (22.2) |
3 |
2795 (28.4) |
4 |
2788 (22.3) |
5 |
2774 (47.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation