NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,500.0 |
Mean read quality |
39.9 |
Median read length |
2,511.0 |
Median read quality |
34.3 |
Number of reads |
4,116.0 |
Read length N50 |
2,522.0 |
STDEV read length |
507.3 |
Total bases |
10,289,909.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
4116 (100.0%) 10.3Mb |
>Q7 |
4116 (100.0%) 10.3Mb |
>Q10 |
4116 (100.0%) 10.3Mb |
>Q12 |
4116 (100.0%) 10.3Mb |
>Q15 |
4116 (100.0%) 10.3Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2483) |
2 |
93.0 (2517) |
3 |
93.0 (2723) |
4 |
93.0 (1289) |
5 |
93.0 (168) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5774 (20.6) |
2 |
5434 (21.8) |
3 |
5421 (36.1) |
4 |
5420 (33.6) |
5 |
5419 (43.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation