NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,470.8 |
Mean read quality |
38.9 |
Median read length |
2,424.0 |
Median read quality |
34.7 |
Number of reads |
4,894.0 |
Read length N50 |
2,427.0 |
STDEV read length |
136.4 |
Total bases |
12,092,288.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
4894 (100.0%) 12.1Mb |
>Q7 |
4894 (100.0%) 12.1Mb |
>Q10 |
4894 (100.0%) 12.1Mb |
>Q12 |
4894 (100.0%) 12.1Mb |
>Q15 |
4894 (100.0%) 12.1Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2515) |
2 |
93.0 (2418) |
3 |
93.0 (2574) |
4 |
93.0 (2361) |
5 |
93.0 (2723) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2795 (21.0) |
2 |
2795 (24.3) |
3 |
2794 (21.4) |
4 |
2774 (51.3) |
5 |
2773 (36.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation