NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,428.8 |
Mean read quality |
39.6 |
Median read length |
2,422.0 |
Median read quality |
34.9 |
Number of reads |
5,289.0 |
Read length N50 |
2,425.0 |
STDEV read length |
325.1 |
Total bases |
12,846,102.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
5289 (100.0%) 12.8Mb |
>Q7 |
5289 (100.0%) 12.8Mb |
>Q10 |
5289 (100.0%) 12.8Mb |
>Q12 |
5289 (100.0%) 12.8Mb |
>Q15 |
5289 (100.0%) 12.8Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2718) |
2 |
93.0 (2139) |
3 |
93.0 (2419) |
4 |
93.0 (1444) |
5 |
93.0 (2352) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5423 (40.5) |
2 |
5201 (34.9) |
3 |
4972 (21.6) |
4 |
4818 (35.4) |
5 |
4807 (22.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation