NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,446.9 |
Mean read quality |
34.1 |
Median read length |
2,423.0 |
Median read quality |
32.4 |
Number of reads |
4,759.0 |
Read length N50 |
2,424.0 |
STDEV read length |
95.5 |
Total bases |
11,644,592.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
4759 (100.0%) 11.6Mb |
>Q7 |
4759 (100.0%) 11.6Mb |
>Q10 |
4759 (100.0%) 11.6Mb |
>Q12 |
4759 (100.0%) 11.6Mb |
>Q15 |
4759 (100.0%) 11.6Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2406) |
2 |
93.0 (2417) |
3 |
93.0 (2558) |
4 |
93.0 (2570) |
5 |
93.0 (2272) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2793 (65.7) |
2 |
2784 (35.1) |
3 |
2775 (93.0) |
4 |
2767 (40.3) |
5 |
2755 (20.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation