NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,380.6 |
Mean read quality |
35.2 |
Median read length |
2,422.0 |
Median read quality |
32.6 |
Number of reads |
5,348.0 |
Read length N50 |
2,423.0 |
STDEV read length |
380.8 |
Total bases |
12,731,400.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
5348 (100.0%) 12.7Mb |
>Q7 |
5348 (100.0%) 12.7Mb |
>Q10 |
5348 (100.0%) 12.7Mb |
>Q12 |
5348 (100.0%) 12.7Mb |
>Q15 |
5348 (100.0%) 12.7Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2407) |
2 |
93.0 (956) |
3 |
93.0 (2570) |
4 |
93.0 (575) |
5 |
93.0 (1459) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5095 (35.3) |
2 |
5038 (26.3) |
3 |
4988 (26.8) |
4 |
4921 (30.8) |
5 |
4874 (41.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation