NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,697.3 |
Mean read quality |
41.5 |
Median read length |
2,723.0 |
Median read quality |
35.8 |
Number of reads |
1,798.0 |
Read length N50 |
2,723.0 |
STDEV read length |
83.8 |
Total bases |
4,849,744.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1798 (100.0%) 4.8Mb |
>Q7 |
1798 (100.0%) 4.8Mb |
>Q10 |
1798 (100.0%) 4.8Mb |
>Q12 |
1798 (100.0%) 4.8Mb |
>Q15 |
1798 (100.0%) 4.8Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2723) |
2 |
93.0 (2723) |
3 |
93.0 (2721) |
4 |
93.0 (2723) |
5 |
93.0 (2365) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2783 (26.8) |
2 |
2771 (22.1) |
3 |
2767 (20.9) |
4 |
2765 (22.1) |
5 |
2765 (20.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation