NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,670.1 |
Mean read quality |
41.7 |
Median read length |
2,723.0 |
Median read quality |
35.8 |
Number of reads |
1,878.0 |
Read length N50 |
2,723.0 |
STDEV read length |
276.7 |
Total bases |
5,014,526.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1878 (100.0%) 5.0Mb |
>Q7 |
1878 (100.0%) 5.0Mb |
>Q10 |
1878 (100.0%) 5.0Mb |
>Q12 |
1878 (100.0%) 5.0Mb |
>Q15 |
1878 (100.0%) 5.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2723) |
2 |
93.0 (2431) |
3 |
93.0 (2365) |
4 |
93.0 (2711) |
5 |
93.0 (2723) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5465 (22.0) |
2 |
5430 (30.0) |
3 |
5406 (39.2) |
4 |
5379 (23.7) |
5 |
5377 (27.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation