NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,563.3 |
Mean read quality |
42.5 |
Median read length |
2,575.0 |
Median read quality |
36.1 |
Number of reads |
5,129.0 |
Read length N50 |
2,582.0 |
STDEV read length |
162.4 |
Total bases |
13,146,952.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
5129 (100.0%) 13.1Mb |
>Q7 |
5129 (100.0%) 13.1Mb |
>Q10 |
5129 (100.0%) 13.1Mb |
>Q12 |
5129 (100.0%) 13.1Mb |
>Q15 |
5129 (100.0%) 13.1Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2723) |
2 |
93.0 (2380) |
3 |
93.0 (2517) |
4 |
93.0 (2688) |
5 |
93.0 (2416) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2792 (22.8) |
2 |
2777 (20.6) |
3 |
2775 (24.2) |
4 |
2774 (31.6) |
5 |
2773 (25.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation