NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,487.3 |
Mean read quality |
39.2 |
Median read length |
2,432.0 |
Median read quality |
33.8 |
Number of reads |
5,921.0 |
Read length N50 |
2,435.0 |
STDEV read length |
144.1 |
Total bases |
14,727,174.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
5921 (100.0%) 14.7Mb |
>Q7 |
5921 (100.0%) 14.7Mb |
>Q10 |
5921 (100.0%) 14.7Mb |
>Q12 |
5921 (100.0%) 14.7Mb |
>Q15 |
5921 (100.0%) 14.7Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2281) |
2 |
93.0 (2283) |
3 |
93.0 (2418) |
4 |
93.0 (2605) |
5 |
93.0 (2501) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2799 (20.3) |
2 |
2790 (26.3) |
3 |
2787 (36.9) |
4 |
2785 (20.1) |
5 |
2785 (20.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation