NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,431.9 |
Mean read quality |
39.8 |
Median read length |
2,430.0 |
Median read quality |
34.1 |
Number of reads |
6,651.0 |
Read length N50 |
2,433.0 |
STDEV read length |
363.2 |
Total bases |
16,174,591.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
6651 (100.0%) 16.2Mb |
>Q7 |
6651 (100.0%) 16.2Mb |
>Q10 |
6651 (100.0%) 16.2Mb |
>Q12 |
6651 (100.0%) 16.2Mb |
>Q15 |
6651 (100.0%) 16.2Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2283) |
2 |
93.0 (2281) |
3 |
93.0 (2281) |
4 |
93.0 (2417) |
5 |
93.0 (2418) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5832 (33.5) |
2 |
4995 (21.1) |
3 |
4960 (26.7) |
4 |
4867 (25.7) |
5 |
4836 (30.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation