NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,430.8 |
Mean read quality |
34.0 |
Median read length |
2,422.0 |
Median read quality |
31.9 |
Number of reads |
3,380.0 |
Read length N50 |
2,422.0 |
STDEV read length |
95.8 |
Total bases |
8,216,045.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
3380 (100.0%) 8.2Mb |
>Q7 |
3380 (100.0%) 8.2Mb |
>Q10 |
3380 (100.0%) 8.2Mb |
>Q12 |
3380 (100.0%) 8.2Mb |
>Q15 |
3380 (100.0%) 8.2Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2416) |
2 |
93.0 (2416) |
3 |
93.0 (2272) |
4 |
93.0 (2272) |
5 |
93.0 (2418) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2774 (57.4) |
2 |
2756 (29.1) |
3 |
2750 (24.7) |
4 |
2745 (24.7) |
5 |
2739 (31.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation