NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,356.1 |
Mean read quality |
35.3 |
Median read length |
2,421.0 |
Median read quality |
32.2 |
Number of reads |
3,764.0 |
Read length N50 |
2,422.0 |
STDEV read length |
358.3 |
Total bases |
8,868,205.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
3764 (100.0%) 8.9Mb |
>Q7 |
3764 (100.0%) 8.9Mb |
>Q10 |
3764 (100.0%) 8.9Mb |
>Q12 |
3764 (100.0%) 8.9Mb |
>Q15 |
3764 (100.0%) 8.9Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (830) |
2 |
93.0 (2272) |
3 |
93.0 (977) |
4 |
93.0 (2226) |
5 |
93.0 (1130) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5368 (29.3) |
2 |
4902 (51.1) |
3 |
4810 (37.1) |
4 |
4793 (35.4) |
5 |
4789 (33.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation