NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,598.0 |
Mean read quality |
43.1 |
Median read length |
2,719.0 |
Median read quality |
37.1 |
Number of reads |
1,137.0 |
Read length N50 |
2,721.0 |
STDEV read length |
163.3 |
Total bases |
2,953,935.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1137 (100.0%) 3.0Mb |
>Q7 |
1137 (100.0%) 3.0Mb |
>Q10 |
1137 (100.0%) 3.0Mb |
>Q12 |
1137 (100.0%) 3.0Mb |
>Q15 |
1137 (100.0%) 3.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2418) |
2 |
93.0 (2723) |
3 |
93.0 (2723) |
4 |
93.0 (2723) |
5 |
93.0 (2723) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2780 (24.1) |
2 |
2768 (20.5) |
3 |
2759 (20.3) |
4 |
2757 (22.9) |
5 |
2756 (26.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation