NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,570.4 |
Mean read quality |
43.2 |
Median read length |
2,717.0 |
Median read quality |
37.0 |
Number of reads |
1,209.0 |
Read length N50 |
2,720.0 |
STDEV read length |
303.4 |
Total bases |
3,107,655.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1209 (100.0%) 3.1Mb |
>Q7 |
1209 (100.0%) 3.1Mb |
>Q10 |
1209 (100.0%) 3.1Mb |
>Q12 |
1209 (100.0%) 3.1Mb |
>Q15 |
1209 (100.0%) 3.1Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2723) |
2 |
93.0 (2357) |
3 |
93.0 (2248) |
4 |
93.0 (2686) |
5 |
93.0 (2428) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5367 (26.2) |
2 |
5088 (33.8) |
3 |
4751 (35.1) |
4 |
4168 (31.6) |
5 |
3850 (27.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation