NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,588.8 |
Mean read quality |
42.6 |
Median read length |
2,716.0 |
Median read quality |
36.5 |
Number of reads |
1,941.0 |
Read length N50 |
2,719.0 |
STDEV read length |
163.7 |
Total bases |
5,024,885.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1941 (100.0%) 5.0Mb |
>Q7 |
1941 (100.0%) 5.0Mb |
>Q10 |
1941 (100.0%) 5.0Mb |
>Q12 |
1941 (100.0%) 5.0Mb |
>Q15 |
1941 (100.0%) 5.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2245) |
2 |
93.0 (2713) |
3 |
93.0 (2513) |
4 |
93.0 (2428) |
5 |
93.0 (2258) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2770 (29.7) |
2 |
2762 (20.7) |
3 |
2761 (21.0) |
4 |
2760 (20.1) |
5 |
2760 (20.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation