NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,569.6 |
Mean read quality |
43.2 |
Median read length |
2,712.0 |
Median read quality |
36.6 |
Number of reads |
2,072.0 |
Read length N50 |
2,719.0 |
STDEV read length |
363.5 |
Total bases |
5,324,155.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
2072 (100.0%) 5.3Mb |
>Q7 |
2072 (100.0%) 5.3Mb |
>Q10 |
2072 (100.0%) 5.3Mb |
>Q12 |
2072 (100.0%) 5.3Mb |
>Q15 |
2072 (100.0%) 5.3Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2723) |
2 |
93.0 (1592) |
3 |
93.0 (2419) |
4 |
93.0 (1598) |
5 |
93.0 (1005) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
6878 (30.4) |
2 |
5516 (21.6) |
3 |
5405 (29.9) |
4 |
5400 (41.9) |
5 |
5368 (26.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation