NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,408.2 |
Mean read quality |
36.3 |
Median read length |
2,422.0 |
Median read quality |
32.6 |
Number of reads |
4,902.0 |
Read length N50 |
2,423.0 |
STDEV read length |
80.0 |
Total bases |
11,804,963.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
4902 (100.0%) 11.8Mb |
>Q7 |
4902 (100.0%) 11.8Mb |
>Q10 |
4902 (100.0%) 11.8Mb |
>Q12 |
4902 (100.0%) 11.8Mb |
>Q15 |
4902 (100.0%) 11.8Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2418) |
2 |
93.0 (2361) |
3 |
93.0 (2503) |
4 |
93.0 (2418) |
5 |
93.0 (2502) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2778 (31.4) |
2 |
2741 (20.6) |
3 |
2727 (26.8) |
4 |
2720 (39.5) |
5 |
2699 (20.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation