NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,684.4 |
Mean read quality |
43.0 |
Median read length |
2,723.0 |
Median read quality |
36.7 |
Number of reads |
3,774.0 |
Read length N50 |
2,723.0 |
STDEV read length |
105.8 |
Total bases |
10,130,876.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
3774 (100.0%) 10.1Mb |
>Q7 |
3774 (100.0%) 10.1Mb |
>Q10 |
3774 (100.0%) 10.1Mb |
>Q12 |
3774 (100.0%) 10.1Mb |
>Q15 |
3774 (100.0%) 10.1Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2723) |
2 |
93.0 (2723) |
3 |
93.0 (2369) |
4 |
93.0 (2723) |
5 |
93.0 (2723) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2793 (27.5) |
2 |
2789 (23.1) |
3 |
2782 (30.0) |
4 |
2780 (28.4) |
5 |
2777 (28.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation