NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,648.8 |
Mean read quality |
43.5 |
Median read length |
2,723.0 |
Median read quality |
36.8 |
Number of reads |
4,002.0 |
Read length N50 |
2,723.0 |
STDEV read length |
328.6 |
Total bases |
10,600,578.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
4002 (100.0%) 10.6Mb |
>Q7 |
4002 (100.0%) 10.6Mb |
>Q10 |
4002 (100.0%) 10.6Mb |
>Q12 |
4002 (100.0%) 10.6Mb |
>Q15 |
4002 (100.0%) 10.6Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2723) |
2 |
93.0 (2369) |
3 |
93.0 (800) |
4 |
93.0 (2720) |
5 |
93.0 (553) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
7106 (32.5) |
2 |
5419 (44.0) |
3 |
5408 (30.5) |
4 |
5405 (46.2) |
5 |
5404 (37.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation