Project

Run - SRR12647577

Project PRJNA663638
Sample SAMN16174922
Experiment SRX9128946
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,653.1 2,692.5
Mean read quality 42.5 42.1
Median read length 2,723.0 2,723.0
Median read quality 36.5 36.5
Number of reads 3,931.0 3,658.0
Read length N50 2,723.0 2,723.0
STDEV read length 333.6 95.8
Total bases 10,429,399.0 9,849,069.0
Before filtering After filtering(length/quality)
#Name SRR12647577_filt.fastq
p__Actinobacteriota 16
p__Actinobacteriota;c__Actinobacteria 16
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales 16
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae 16
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium 16
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_acnes 16
p__Firmicutes 181
p__Firmicutes;c__Bacilli 50
p__Firmicutes;c__Bacilli;o__Lactobacillales 20
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Brochotrichaceae 17
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Brochotrichaceae;g__Brochothrix 17
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Brochotrichaceae;g__Brochothrix;s__Brochothrix_thermosphacta 17
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae 3
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus 3
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus_faecalis 3
p__Firmicutes;c__Bacilli;o__Staphylococcales 30
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae 30
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus 30
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_aureus 12
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_capitis 10
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_epidermidis 8
p__Firmicutes;c__Clostridia 124
p__Firmicutes;c__Clostridia;o__Peptostreptococcales 121
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae 121
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides 121
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides;s__Clostridioides_difficile 121
p__Firmicutes;c__Clostridia;o__Tissierellales 3
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae 3
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Finegoldia 3
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Finegoldia;s__Finegoldia_magna 3
p__Firmicutes;c__Negativicutes 7
p__Firmicutes;c__Negativicutes;o__Veillonellales 7
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae 7
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella 7
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_parvula 7
p__Proteobacteria 3446
p__Proteobacteria;c__Gammaproteobacteria 3446
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 3315
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 3315
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 3310
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 3310
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Herbaspirillum 5
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Herbaspirillum;s__Herbaspirillum_aquaticum 4
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Herbaspirillum;s__Herbaspirillum_sp000261365 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 131
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 131
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter 115
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_himalayensis 115
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia 16
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia;s__Serratia_liquefaciens 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia;s__Serratia_proteamaculans 15

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