Project

Run - SRR12647609

Project PRJNA663638
Sample SAMN16174925
Experiment SRX9128914
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,368.9 2,402.3
Mean read quality 39.3 38.6
Median read length 2,347.0 2,348.0
Median read quality 33.9 33.8
Number of reads 7,911.0 7,438.0
Read length N50 2,348.0 2,348.0
STDEV read length 268.9 122.7
Total bases 18,740,115.0 17,868,360.0
Before filtering After filtering(length/quality)
#Name SRR12647609_filt.fastq
p__Actinobacteriota 82
p__Actinobacteriota;c__Actinobacteria 82
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 82
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae 7
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia 7
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia_keddieii 2
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia_radingae 5
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae 75
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Alloscardovia 1
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Alloscardovia;s__Alloscardovia_omnicolens 1
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium 74
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium_scardovii 74
p__Firmicutes 5118
p__Firmicutes;c__Bacilli 4809
p__Firmicutes;c__Bacilli;o__Erysipelotrichales 4798
p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae 4798
p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Absiella 4798
p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Absiella;s__Absiella_innocuum 4798
p__Firmicutes;c__Bacilli;o__Lactobacillales 11
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae 11
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus 11
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus_faecalis 7
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus_faecium 4
p__Firmicutes;c__Clostridia 305
p__Firmicutes;c__Clostridia;o__Clostridiales 228
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 228
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium 228
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_argentinense 16
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_neonatale 1
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_paraputrificum 141
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_perfringens 19
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_saccharobutylicum 1
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_sp000821305 50
p__Firmicutes;c__Clostridia;o__Peptostreptococcales 69
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae 69
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides 46
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides;s__Clostridioides_difficile 46
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia 23
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia;s__Romboutsia_ilealis 7
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia;s__Romboutsia_sp900002575 16
p__Firmicutes;c__Clostridia;o__Tissierellales 8
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae 8
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus 8
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus;s__Peptoniphilus_harei 8
p__Firmicutes;c__Negativicutes 4
p__Firmicutes;c__Negativicutes;o__Veillonellales 4
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae 4
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella 4
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_dispar 1
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_infantium 1
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_parvula 2
p__Proteobacteria 2207
p__Proteobacteria;c__Gammaproteobacteria 2207
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 734
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 734
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 734
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 734
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 1473
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 1473
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter 1471
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_himalayensis 1471
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_flexneri 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pluralibacter 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pluralibacter;s__Pluralibacter_gergoviae 1

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