Project

Run - SRR12647608

Project PRJNA663638
Sample SAMN16174928
Experiment SRX9128915
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,651.9 2,675.2
Mean read quality 41.4 41.2
Median read length 2,723.0 2,723.0
Median read quality 35.9 35.9
Number of reads 3,660.0 3,512.0
Read length N50 2,723.0 2,723.0
STDEV read length 255.1 116.7
Total bases 9,705,824.0 9,395,453.0
Before filtering After filtering(length/quality)
#Name SRR12647608_filt.fastq
p__Actinobacteriota 11
p__Actinobacteriota;c__Actinobacteria 11
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 11
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Microbacteriaceae 11
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Microbacteriaceae;g__Curtobacterium 11
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Microbacteriaceae;g__Curtobacterium;s__Curtobacterium_sp001865065 11
p__Firmicutes 14
p__Firmicutes;c__Bacilli 13
p__Firmicutes;c__Bacilli;o__Bacillales 7
p__Firmicutes;c__Bacilli;o__Bacillales;f__Planococcaceae 7
p__Firmicutes;c__Bacilli;o__Bacillales;f__Planococcaceae;g__Ureibacillus 7
p__Firmicutes;c__Bacilli;o__Bacillales;f__Planococcaceae;g__Ureibacillus;s__Ureibacillus_thermosphaericus 7
p__Firmicutes;c__Bacilli;o__Lactobacillales 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_pasteurianus 1
p__Firmicutes;c__Bacilli;o__Staphylococcales 5
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae 5
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus 5
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_epidermidis 5
p__Firmicutes;c__Clostridia 1
p__Firmicutes;c__Clostridia;o__Clostridiales 1
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 1
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium 1
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_perfringens 1
p__Proteobacteria 3475
p__Proteobacteria;c__Gammaproteobacteria 3475
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 2950
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 2950
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 2950
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 2950
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 525
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 525
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter 242
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_cloacae 203
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_himalayensis 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_nimipressuralis 38
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella 283
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_michiganensis 2
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_pneumoniae 279
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_quasipneumoniae 2

  • QC

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  • Taxonomic profiling

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