Project

Run - SRR12647603

Project PRJNA663638
Sample SAMN16174933
Experiment SRX9128920
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,644.5 2,685.5
Mean read quality 44.1 43.7
Median read length 2,723.0 2,723.0
Median read quality 37.2 37.1
Number of reads 2,467.0 2,313.0
Read length N50 2,723.0 2,723.0
STDEV read length 316.5 108.7
Total bases 6,523,863.0 6,211,511.0
Before filtering After filtering(length/quality)
#Name SRR12647603_filt.fastq
p__Firmicutes 88
p__Firmicutes;c__Bacilli 83
p__Firmicutes;c__Bacilli;o__Lactobacillales 31
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae 3
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus 3
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus_faecalis 3
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae 28
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus 28
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_infantis 6
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_mitis 17
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_pneumoniae 5
p__Firmicutes;c__Bacilli;o__Staphylococcales 52
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae 52
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus 52
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_epidermidis 52
p__Firmicutes;c__Negativicutes 5
p__Firmicutes;c__Negativicutes;o__Veillonellales 5
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae 5
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella 5
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_sp000431435 5
p__Proteobacteria 2220
p__Proteobacteria;c__Gammaproteobacteria 2220
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 2076
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 2076
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 2065
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 2065
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia 11
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia;s__Massilia_putida 7
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia;s__Massilia_sp001412595 4
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 144
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 144
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter 144
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_cloacae 20
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_himalayensis 124

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