Project

Run - SRR12647596

Project PRJNA663638
Sample SAMN16174939
Experiment SRX9128927
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,656.9 2,680.5
Mean read quality 41.0 40.6
Median read length 2,723.0 2,724.0
Median read quality 35.9 35.8
Number of reads 5,214.0 4,943.0
Read length N50 2,724.0 2,724.0
STDEV read length 332.2 122.0
Total bases 13,852,965.0 13,249,645.0
Before filtering After filtering(length/quality)
#Name SRR12647596_filt.fastq
p__Actinobacteriota 10
p__Actinobacteriota;c__Actinobacteria 10
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales 10
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae 10
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium 10
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_acnes 10
p__Firmicutes 289
p__Firmicutes;c__Clostridia 289
p__Firmicutes;c__Clostridia;o__Clostridiales 289
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 289
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium 289
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_perfringens 289
p__Proteobacteria 4633
p__Proteobacteria;c__Gammaproteobacteria 4633
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 4311
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 4311
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 4311
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 4311
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 322
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 322
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter 11
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;s__Citrobacter_braakii 11
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter 5
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_ludwigii 5
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella 93
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_michiganensis 93
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Leclercia 11
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Leclercia;s__Leclercia_adecarboxylata 11
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea 202
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea;s__Pantoea_septica 202

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  • Taxonomic profiling

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