Project

Run - SRR12647588

Project PRJNA663638
Sample SAMN16174946
Experiment SRX9128935
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,691.2 2,719.5
Mean read quality 41.4 41.1
Median read length 2,723.0 2,724.0
Median read quality 36.3 36.2
Number of reads 3,275.0 3,138.0
Read length N50 2,724.0 2,724.0
STDEV read length 276.7 39.3
Total bases 8,813,642.0 8,533,738.0
Before filtering After filtering(length/quality)
#Name SRR12647588_filt.fastq
p__Proteobacteria 3130
p__Proteobacteria;c__Gammaproteobacteria 3130
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 3122
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 3122
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 3122
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 3122
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 8
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 8
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter 8
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;s__Citrobacter_freundii 8

  • QC

NanoPlot Before zip
After zip

  • Taxonomic profiling

Plot Krona html
Pie zip
Abundance table Plain txt
Mpa version txt

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