Project

Run - SRR12647587

Project PRJNA663638
Sample SAMN16174947
Experiment SRX9128936
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,663.4 2,708.9
Mean read quality 43.0 42.5
Median read length 2,723.0 2,723.0
Median read quality 36.6 36.5
Number of reads 4,125.0 3,834.0
Read length N50 2,723.0 2,723.0
STDEV read length 326.7 74.9
Total bases 10,986,522.0 10,385,860.0
Before filtering After filtering(length/quality)
#Name SRR12647587_filt.fastq
p__Actinobacteriota 9
p__Actinobacteriota;c__Actinobacteria 9
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 2
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae 2
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium 2
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium_breve 2
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales 7
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae 7
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium 7
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_acnes 7
p__Firmicutes 71
p__Firmicutes;c__Bacilli 27
p__Firmicutes;c__Bacilli;o__Lactobacillales 25
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus_faecalis 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae 24
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus 24
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_pasteurianus 24
p__Firmicutes;c__Bacilli;o__Staphylococcales 2
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae 2
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus 2
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_epidermidis 2
p__Firmicutes;c__Clostridia 44
p__Firmicutes;c__Clostridia;o__Clostridiales 44
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 44
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium 44
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_perfringens 44
p__Proteobacteria 3739
p__Proteobacteria;c__Alphaproteobacteria 3
p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales 3
p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae 3
p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus 3
p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__Paracoccus_contaminans 1
p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__Paracoccus_sp002287065 2
p__Proteobacteria;c__Gammaproteobacteria 3736
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 3705
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 3705
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 3705
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 3705
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 31
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 31
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter 9
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;s__Citrobacter_freundii 9
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella 22
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_michiganensis 21
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_pneumoniae 1

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