Project

Run - SRR12647584

Project PRJNA663638
Sample SAMN16174950
Experiment SRX9128939
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,500.8 2,532.6
Mean read quality 44.2 43.9
Median read length 2,503.0 2,530.0
Median read quality 36.9 36.7
Number of reads 6,783.0 6,368.0
Read length N50 2,573.0 2,574.0
STDEV read length 318.0 172.8
Total bases 16,962,935.0 16,127,295.0
Before filtering After filtering(length/quality)
#Name SRR12647584_filt.fastq
p__Actinobacteriota 164
p__Actinobacteriota;c__Actinobacteria 164
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 154
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae 3
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia 3
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia_turicensis 3
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae 146
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium 146
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium_breve 146
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Dermatophilaceae 4
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Dermatophilaceae;g__Knoellia 4
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Dermatophilaceae;g__Knoellia;s__Knoellia_sp000152705 4
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Microbacteriaceae 1
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium 1
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium;s__Microbacterium_sp001619615 1
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales 3
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae 3
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium 3
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium_kefirresidentii 3
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales 7
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae 7
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium 7
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_acnes 7
p__Bacteroidota 2
p__Bacteroidota;c__Bacteroidia 2
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales 2
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae 2
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella 2
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella_fusca 2
p__Firmicutes 1712
p__Firmicutes;c__Bacilli 260
p__Firmicutes;c__Bacilli;o__Lactobacillales 260
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Facklamia 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Facklamia;s__Facklamia_hominis 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae 6
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus 6
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus_faecalis 6
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae 253
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus 253
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_infantis 4
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_oralis 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_pasteurianus 233
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_pseudopneumoniae 5
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_sanguinis 6
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_vestibularis 4
p__Firmicutes;c__Clostridia 1353
p__Firmicutes;c__Clostridia;o__Clostridiales 1341
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 1341
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium 1341
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_neonatale 798
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_perfringens 543
p__Firmicutes;c__Clostridia;o__Tissierellales 12
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae 6
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Anaerococcus 1
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Anaerococcus;s__Anaerococcus_provencensis 1
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Finegoldia 5
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Finegoldia;s__Finegoldia_magna 5
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae 6
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus 6
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus;s__Peptoniphilus_sp900088125 6
p__Firmicutes;c__Negativicutes 99
p__Firmicutes;c__Negativicutes;o__Veillonellales 99
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae 1
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera 1
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera;s__Megasphaera_sp900066485 1
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae 98
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella 98
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_dispar 31
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_parvula 67
p__Proteobacteria 4474
p__Proteobacteria;c__Gammaproteobacteria 4474
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 2355
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 2355
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 2355
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 2355
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 2119
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 2119
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;s__Citrobacter_freundii 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia 241
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_coli 238
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_flexneri 3
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella 1877
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_aerogenes 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_grimontii 2
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_michiganensis 1873
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_pneumoniae 1

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