Project

Run - SRR12647580

Project PRJNA663638
Sample SAMN16174954
Experiment SRX9128943
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,346.7 2,397.4
Mean read quality 49.2 48.8
Median read length 2,419.0 2,420.0
Median read quality 39.2 39.1
Number of reads 1,033.0 968.0
Read length N50 2,420.0 2,420.0
STDEV read length 300.6 92.9
Total bases 2,424,165.0 2,320,655.0
Before filtering After filtering(length/quality)
#Name SRR12647580_filt.fastq
p__Actinobacteriota 21
p__Actinobacteriota;c__Actinobacteria 21
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales 21
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae 21
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium 21
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_avidum 21
p__Firmicutes 38
p__Firmicutes;c__Bacilli 31
p__Firmicutes;c__Bacilli;o__Lactobacillales 3
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus_faecalis 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae 2
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus 2
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_sp001587175 2
p__Firmicutes;c__Bacilli;o__Staphylococcales 28
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae 28
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus 28
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_aureus 24
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_epidermidis 4
p__Firmicutes;c__Clostridia 7
p__Firmicutes;c__Clostridia;o__Tissierellales 7
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae 7
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Finegoldia 7
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Finegoldia;s__Finegoldia_magna 7
p__Proteobacteria 908
p__Proteobacteria;c__Gammaproteobacteria 908
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 908
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 908
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter 426
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_cloacae 11
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_himalayensis 415
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_coli 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella 394
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_grimontii 388
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_michiganensis 6
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Metakosakonia 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Metakosakonia;s__Metakosakonia_intestini 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Raoultella 86
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Raoultella;s__Raoultella_ornithinolytica 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Raoultella;s__Raoultella_planticola 85

  • QC

NanoPlot Before zip
After zip

  • Taxonomic profiling

Plot Krona html
Pie zip
Abundance table Plain txt
Mpa version txt