Project

Run - SRR13295153

Project PRJNA687502
Sample SAMN17147237
Experiment SRX9724090
Instrument Platform Oxford Nanopore
Instrument Model MinION
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRGTTYGATYHTGGCTCAG
Reverse primer: ACCRCCCCAGTHRAACT
Before filtering After filtering(length/quality)
Mean read length 3,958.7 4,149.1
Mean read quality 9.7 10.1
Median read length 4,129.0 4,157.0
Median read quality 10.0 10.2
Number of reads 20,048.0 16,719.0
Read length N50 4,147.0 4,162.0
STDEV read length 810.9 181.6
Total bases 79,363,592.0 69,368,180.0
Before filtering After filtering(length/quality)
#Name SRR13295153.paf
p__Actinobacteriota 625
p__Actinobacteriota;c__Actinobacteria 625
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 625
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae 625
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium 625
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium_adolescentis 625
p__Bacteroidota 5531
p__Bacteroidota;c__Bacteroidia 5531
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales 5531
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae 5531
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides 3761
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides_dorei 7
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides_fragilis 3754
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella 1770
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella_copri 1
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella_denticola 1
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella_fusca 718
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella_ihumii 12
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella_intermedia 194
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella_jejuni 467
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella_melaninogenica 114
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella_nigrescens 1
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella_pallens 21
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella_scopos 16
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella_sp000688375 225
p__Firmicutes 6090
p__Firmicutes;c__Bacilli 949
p__Firmicutes;c__Bacilli;o__Lactobacillales 949
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae 949
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus 949
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus_acidophilus 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus_fermentum 948
p__Firmicutes;c__Clostridia 2987
p__Firmicutes;c__Clostridia;o__Lachnospirales 407
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae 407
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia 407
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia;s__Roseburia_hominis 407
p__Firmicutes;c__Clostridia;o__Oscillospirales 1987
p__Firmicutes;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae 1987
p__Firmicutes;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium 1987
p__Firmicutes;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium;s__Faecalibacterium_prausnitzii 1987
p__Firmicutes;c__Clostridia;o__Peptostreptococcales 593
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae 593
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides 593
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides;s__Clostridioides_difficile 593
p__Firmicutes;c__Negativicutes 2154
p__Firmicutes;c__Negativicutes;o__Veillonellales 2154
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae 2154
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella 2154
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_atypica 33
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_dispar 1101
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_parvula 550
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_rodentium 1
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_rogosae 469
p__Fusobacteriota 819
p__Fusobacteriota;c__Fusobacteriia 819
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales 819
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae 819
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium 819
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium_animalis 819
p__Proteobacteria 3493
p__Proteobacteria;c__Gammaproteobacteria 3493
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 3493
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 3493
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia 3483
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_coli 32
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_dysenteriae 37
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_fergusonii 2
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_flexneri 3412
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Rahnella 2
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Rahnella;s__Rahnella_sp003263545 2
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella 8
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella_enterica 8
p__Verrucomicrobiota 112
p__Verrucomicrobiota;c__Verrucomicrobiae 112
p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales 112
p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae 112
p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia 112
p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia;s__Akkermansia_muciniphila 112

  • QC

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After zip

  • Taxonomic profiling

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