Project

Project - PRJNA495486

Microbiota samples Raw sequence reads

Descriptions

Here we aim to assess long-amplicon PCR-based approaches for microbiota studies by Nanopore sequencing using two different markers: full-length 16S rRNA and the whole rrn operon (16S rRNA-ITS-23S rRNA gene). This raw data contains full-length 16S rRNA and rrn operon sequences of: i) a Staphylococcus pseudintermedius isolated from canine otitis; ii) mock communities (HM-783D and Zymobiomics); and iii) complex skin samples (chin and dorsal skin).

External Links

ENA website

NCBI website

Publication

Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the rrn operon
Anna Cusco, et al. 2019

Runs 8

Sample Accession Run Accession Scientific Name Instrument Platform Instrument Model Library Name
SAMN10219775 SRR8029985 synthetic metagenome Oxford Nanopore MinION Z_rrn_2
SAMN10219775 SRR8029986 synthetic metagenome Oxford Nanopore MinION Z_rrn_1
SAMN10219879 SRR8029995 metagenome Oxford Nanopore MinION HM_rrn_1
SAMN10219880 SRR8029991 metagenome Oxford Nanopore MinION Chin_rrn_2
SAMN10219880 SRR8029992 metagenome Oxford Nanopore MinION Chin_rrn_1
SAMN10219881 SRR8029987 metagenome Oxford Nanopore MinION Skin_rrn_2
SAMN10219881 SRR8029988 metagenome Oxford Nanopore MinION Skin_rrn_1
SAMN10219882 SRR8029997 Staphylococcus pseudintermedius Oxford Nanopore MinION Staph_rrn

  • Address26 Beobwon-ro 9-gil Bldg. C, #1008 (H business park) Songpa-gu, Seoul 05836, Korea

  • Phone+82-2-876-8820

  • Fax+82-2-876-8827

© 2021-2022 eGnome | BIOPOP All rights reserved