Project

Run - SRR8113901

Project PRJNA498591
Sample SAMN10319748
Experiment SRX4940266
Instrument Platform PacBio SMRT
Instrument Model PacBio RS II
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: CAGCMGCCGCGGTAA
Reverse primer: CCRAMCTGTCTCACGACG
Before filtering After filtering(length/quality)
Mean read length 2,964.4 3,996.5
Mean read quality 21.7 19.2
Median read length 3,791.0 3,983.0
Median read quality 20.7 19.3
Number of reads 22,286.0 13,003.0
Read length N50 3,947.0 3,998.0
STDEV read length 1,403.9 198.5
Total bases 66,064,026.0 51,966,727.0
Before filtering After filtering(length/quality)
#Name SRR8113901.paf
p__Acidobacteriota 69
p__Acidobacteriota;c__Acidobacteriae 69
p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales 69
p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae 69
p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Terriglobus 69
p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Terriglobus;s__Terriglobus_roseus 69
p__Actinobacteriota 598
p__Actinobacteriota;c__Acidimicrobiia 145
p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales 145
p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Acidimicrobiaceae 145
p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Acidimicrobiaceae;g__Acidimicrobium 145
p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Acidimicrobiaceae;g__Acidimicrobium;s__Acidimicrobium_ferrooxidans 145
p__Actinobacteriota;c__Actinobacteria 37
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 37
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae 37
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium 37
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium_animalis 37
p__Actinobacteriota;c__Thermoleophilia 416
p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales 416
p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae 416
p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__Conexibacter 416
p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__Conexibacter;s__Conexibacter_woesei 416
p__Aquificota 195
p__Aquificota;c__Desulfurobacteriia 195
p__Aquificota;c__Desulfurobacteriia;o__Desulfurobacteriales 195
p__Aquificota;c__Desulfurobacteriia;o__Desulfurobacteriales;f__Desulfurobacteriaceae 195
p__Aquificota;c__Desulfurobacteriia;o__Desulfurobacteriales;f__Desulfurobacteriaceae;g__Desulfurobacterium 195
p__Aquificota;c__Desulfurobacteriia;o__Desulfurobacteriales;f__Desulfurobacteriaceae;g__Desulfurobacterium;s__Desulfurobacterium_thermolithotrophum 195
p__Bacteroidota 89
p__Bacteroidota;c__Bacteroidia 89
p__Bacteroidota;c__Bacteroidia;o__Cytophagales 89
p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae 89
p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter 89
p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter;s__Dyadobacter_fermentans 89
p__Chloroflexota 109
p__Chloroflexota;c__Anaerolineae 109
p__Chloroflexota;c__Anaerolineae;o__Caldilineales 109
p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae 109
p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea 109
p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea;s__Caldilinea_aerophila 109
p__Deferribacterota 99
p__Deferribacterota;c__Deferribacteres 99
p__Deferribacterota;c__Deferribacteres;o__Deferribacterales 99
p__Deferribacterota;c__Deferribacteres;o__Deferribacterales;f__Denitrovibrionaceae 99
p__Deferribacterota;c__Deferribacteres;o__Deferribacterales;f__Denitrovibrionaceae;g__Denitrovibrio 99
p__Deferribacterota;c__Deferribacteres;o__Deferribacterales;f__Denitrovibrionaceae;g__Denitrovibrio;s__Denitrovibrio_acetiphilus 99
p__Deinococcota 243
p__Deinococcota;c__Deinococci 243
p__Deinococcota;c__Deinococci;o__Deinococcales 243
p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae 11
p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus 11
p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus;s__Deinococcus_geothermalis 11
p__Deinococcota;c__Deinococci;o__Deinococcales;f__Trueperaceae 232
p__Deinococcota;c__Deinococci;o__Deinococcales;f__Trueperaceae;g__Truepera 232
p__Deinococcota;c__Deinococci;o__Deinococcales;f__Trueperaceae;g__Truepera;s__Truepera_radiovictrix 232
p__Desulfobacterota 58
p__Desulfobacterota;c__Thermodesulfobacteria 58
p__Desulfobacterota;c__Thermodesulfobacteria;o__Thermodesulfobacteriales 58
p__Desulfobacterota;c__Thermodesulfobacteria;o__Thermodesulfobacteriales;f__Thermodesulfatatoraceae 58
p__Desulfobacterota;c__Thermodesulfobacteria;o__Thermodesulfobacteriales;f__Thermodesulfatatoraceae;g__Thermodesulfatator 58
p__Desulfobacterota;c__Thermodesulfobacteria;o__Thermodesulfobacteriales;f__Thermodesulfatatoraceae;g__Thermodesulfatator;s__Thermodesulfatator_indicus 58
p__Dictyoglomota 3
p__Dictyoglomota;c__Dictyoglomia 3
p__Dictyoglomota;c__Dictyoglomia;o__Dictyoglomales 3
p__Dictyoglomota;c__Dictyoglomia;o__Dictyoglomales;f__Dictyoglomaceae 3
p__Dictyoglomota;c__Dictyoglomia;o__Dictyoglomales;f__Dictyoglomaceae;g__Dictyoglomus 3
p__Dictyoglomota;c__Dictyoglomia;o__Dictyoglomales;f__Dictyoglomaceae;g__Dictyoglomus;s__Dictyoglomus_turgidum 3
p__Firmicutes 1097
p__Firmicutes;c__Alicyclobacillia 1
p__Firmicutes;c__Alicyclobacillia;o__Kyrpidiales 1
p__Firmicutes;c__Alicyclobacillia;o__Kyrpidiales;f__Kyrpidiaceae 1
p__Firmicutes;c__Alicyclobacillia;o__Kyrpidiales;f__Kyrpidiaceae;g__Kyrpidia 1
p__Firmicutes;c__Alicyclobacillia;o__Kyrpidiales;f__Kyrpidiaceae;g__Kyrpidia;s__Kyrpidia_tusciae 1
p__Firmicutes;c__Bacilli 705
p__Firmicutes;c__Bacilli;o__Bacillales 109
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae 109
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus 109
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus_amyloliquefaciens 102
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus_cereus 1
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus_velezensis 6
p__Firmicutes;c__Bacilli;o__Lactobacillales 594
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae 592
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus 592
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus_reuteri 592
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae 2
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus 2
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_pneumoniae 2
p__Firmicutes;c__Bacilli;o__Staphylococcales 2
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae 2
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus 2
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_epidermidis 2
p__Firmicutes;c__Clostridia 251
p__Firmicutes;c__Clostridia;o__Lachnospirales 251
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae 251
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__Cellulosilyticum 251
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__Cellulosilyticum;s__Cellulosilyticum_lentocellum 251
p__Firmicutes;c__Halanaerobiia 62
p__Firmicutes;c__Halanaerobiia;o__Halobacteroidales 62
p__Firmicutes;c__Halanaerobiia;o__Halobacteroidales;f__Halobacteroidaceae 62
p__Firmicutes;c__Halanaerobiia;o__Halobacteroidales;f__Halobacteroidaceae;g__Halobacteroides 62
p__Firmicutes;c__Halanaerobiia;o__Halobacteroidales;f__Halobacteroidaceae;g__Halobacteroides;s__Halobacteroides_halobius 62
p__Firmicutes;c__Negativicutes 78
p__Firmicutes;c__Negativicutes;o__Veillonellales 78
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae 58
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera 58
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera;s__Megasphaera_elsdenii 58
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae 20
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella 20
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_parvula 20
p__Fusobacteriota 115
p__Fusobacteriota;c__Fusobacteriia 115
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales 115
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae 115
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Streptobacillus 115
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Streptobacillus;s__Streptobacillus_moniliformis 115
p__Myxococcota 2
p__Myxococcota;c__Myxococcia 2
p__Myxococcota;c__Myxococcia;o__Myxococcales 2
p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae 2
p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus 2
p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus;s__Myxococcus_stipitatus 2
p__Planctomycetota 3611
p__Planctomycetota;c__Planctomycetes 3611
p__Planctomycetota;c__Planctomycetes;o__Isosphaerales 3611
p__Planctomycetota;c__Planctomycetes;o__Isosphaerales;f__Isosphaeraceae 3611
p__Planctomycetota;c__Planctomycetes;o__Isosphaerales;f__Isosphaeraceae;g__Singulisphaera 3611
p__Planctomycetota;c__Planctomycetes;o__Isosphaerales;f__Isosphaeraceae;g__Singulisphaera;s__Singulisphaera_acidiphila 3611
p__Proteobacteria 985
p__Proteobacteria;c__Alphaproteobacteria 30
p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales 30
p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae 30
p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Phaeobacter 30
p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Phaeobacter;s__Phaeobacter_inhibens 30
p__Proteobacteria;c__Gammaproteobacteria 955
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 761
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 2
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Moellerella 2
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Moellerella;s__Moellerella_wisconsensis 2
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae 759
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Ferrimonas 759
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Ferrimonas;s__Ferrimonas_balearica 759
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales 194
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae 194
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas 194
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas_stutzeri 194
p__Spirochaetota 27
p__Spirochaetota;c__Spirochaetia 27
p__Spirochaetota;c__Spirochaetia;o__Spirochaetales 27
p__Spirochaetota;c__Spirochaetia;o__Spirochaetales;f__Spirochaetaceae 27
p__Spirochaetota;c__Spirochaetia;o__Spirochaetales;f__Spirochaetaceae;g__Spirochaeta 27
p__Spirochaetota;c__Spirochaetia;o__Spirochaetales;f__Spirochaetaceae;g__Spirochaeta;s__Spirochaeta_thermophila 27
p__Synergistota 8
p__Synergistota;c__Synergistia 8
p__Synergistota;c__Synergistia;o__Synergistales 8
p__Synergistota;c__Synergistia;o__Synergistales;f__Thermovirgaceae 8
p__Synergistota;c__Synergistia;o__Synergistales;f__Thermovirgaceae;g__Thermovirga 8
p__Synergistota;c__Synergistia;o__Synergistales;f__Thermovirgaceae;g__Thermovirga;s__Thermovirga_lienii 8
p__Verrucomicrobiota 1070
p__Verrucomicrobiota;c__Verrucomicrobiae 1070
p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales 1070
p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Puniceicoccaceae 1070
p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Puniceicoccaceae;g__Coraliomargarita 1070
p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Puniceicoccaceae;g__Coraliomargarita;s__Coraliomargarita_akajimensis 1070

  • QC

NanoPlot Before zip
After zip

  • Taxonomic profiling

Plot Krona html
Pie zip
Abundance table Plain txt
Mpa version txt