Project

Project - PRJNA529518

rRNA operon profiling of the mouse gut microbiome

Descriptions

For this study, the fecal bacterial community from a gene knock out mouse [adenylyl cyclase 5 knock-out (AC5KO]) and their wild-type (WT) littermates under exercise or sedentary conditions were profiled by sequencing rRNA operons. AC5KO mice were chosen since this genotype displays enhanced longevity/exercise capacity and protects against cardiovascular/metabolic disease.

External Links

ENA website

NCBI website

Publication

Host genotype and exercise exhibit species-level selection for members of the gut bacterial communities in the mouse digestive system
R. A. Dowden, et al. 2020

Runs 17

Sample Accession Run Accession Scientific Name Instrument Platform Instrument Model Library Name
SAMN11269080 SRR8799173 mouse gut metagenome Oxford Nanopore MinION Lib_AC5KO_SedA
SAMN11269081 SRR8799174 mouse gut metagenome Oxford Nanopore MinION Lib_AC5KO_SedB
SAMN11269082 SRR8799175 mouse gut metagenome Oxford Nanopore MinION Lib_AC5KO_SedC
SAMN11269083 SRR8799176 mouse gut metagenome Oxford Nanopore MinION Lib_AC5KO_SedD
SAMN11269084 SRR8799169 mouse gut metagenome Oxford Nanopore MinION Lib_WT_SedA
SAMN11269085 SRR8799170 mouse gut metagenome Oxford Nanopore MinION Lib_WT_SedB
SAMN11269086 SRR8799171 mouse gut metagenome Oxford Nanopore MinION Lib_WT_SedC
SAMN11269087 SRR8799172 mouse gut metagenome Oxford Nanopore MinION Lib_WT_SedD
SAMN11269088 SRR8799167 mouse gut metagenome Oxford Nanopore MinION Lib_WT_SedE
SAMN11269089 SRR8799168 mouse gut metagenome Oxford Nanopore MinION Lib_WT_SedF
SAMN11269090 SRR8799160 mouse gut metagenome Oxford Nanopore MinION Lib_WT_ExerA
SAMN11269091 SRR8799161 mouse gut metagenome Oxford Nanopore MinION Lib_WT_ExerB
SAMN11269092 SRR8799162 mouse gut metagenome Oxford Nanopore MinION Lib_WT_ExerC
SAMN11269093 SRR8799163 mouse gut metagenome Oxford Nanopore MinION Lib_WT_ExerD
SAMN11269094 SRR8799164 mouse gut metagenome Oxford Nanopore MinION Lib_AC5KO_ExerA
SAMN11269095 SRR8799165 mouse gut metagenome Oxford Nanopore MinION Lib_AC5KO_ExerB
SAMN11269096 SRR8799166 mouse gut metagenome Oxford Nanopore MinION Lib_AC5KO_ExerC

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