Project

Run - SRR10080691

Project PRJNA564314
Sample SAMN12703391
Experiment SRX6813716
Instrument Platform Oxford Nanopore
Instrument Model MinION
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGAGTTTGATCCTGGCTCAG
Reverse primer: ACCGCCCCAGTHAAACT
Before filtering After filtering(length/quality)
Mean read length 4,346.5 4,343.2
Mean read quality 10.2 10.2
Median read length 4,354.0 4,354.0
Median read quality 10.4 10.4
Number of reads 14,894.0 14,846.0
Read length N50 4,355.0 4,355.0
STDEV read length 115.8 100.5
Total bases 64,736,402.0 64,479,694.0
Before filtering After filtering(length/quality)
#Name SRR10080691.paf
p__Actinobacteriota 1550
p__Actinobacteriota;c__Actinobacteria 1550
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 4
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae 3
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces 1
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces_graevenitzii 1
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia 2
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia_pacaensis 1
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia_sp000466265 1
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Micrococcaceae 1
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Micrococcaceae;g__Rothia 1
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia_sp001808955 1
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales 1425
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae 1425
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium 1424
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium_accolens 499
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium_kefirresidentii 331
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium_kroppenstedtii 49
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium_propinquum 475
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium_sp000478175 70
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Lawsonella 1
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Lawsonella;s__Lawsonella_clevelandensis 1
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales 120
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Nocardioidaceae 7
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Nocardioidaceae;g__Aeromicrobium 4
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Nocardioidaceae;g__Aeromicrobium;s__Aeromicrobium_sp001428805 3
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Nocardioidaceae;g__Aeromicrobium;s__Aeromicrobium_sp003065605 1
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides 3
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides;s__Nocardioides_sp003160695 3
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae 113
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium 113
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_acnes 87
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_avidum 3
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_granulosum 22
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_namnetense 1
p__Actinobacteriota;c__Actinobacteria;o__Sporichthyales 1
p__Actinobacteriota;c__Actinobacteria;o__Sporichthyales;f__Sporichthyaceae 1
p__Actinobacteriota;c__Actinobacteria;o__Sporichthyales;f__Sporichthyaceae;g__Sporichthya 1
p__Actinobacteriota;c__Actinobacteria;o__Sporichthyales;f__Sporichthyaceae;g__Sporichthya;s__Sporichthya_polymorpha 1
p__Campylobacterota 2
p__Campylobacterota;c__Campylobacteria 2
p__Campylobacterota;c__Campylobacteria;o__Campylobacterales 2
p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae 2
p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter 2
p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter_concisus 2
p__Chloroflexota 4
p__Chloroflexota;c__Ktedonobacteria 4
p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales 4
p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae 4
p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae;g__Ktedonobacter 3
p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae;g__Ktedonobacter;s__Ktedonobacter_racemifer 3
p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae;g__Thermosporothrix 1
p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae;g__Thermosporothrix;s__Thermosporothrix_hazakensis 1
p__Firmicutes 71
p__Firmicutes;c__Bacilli 27
p__Firmicutes;c__Bacilli;o__Lactobacillales 6
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae 2
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Facklamia 2
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Facklamia;s__Facklamia_sp003521095 2
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae 4
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus 4
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_parasanguinis 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_peroris 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_pneumoniae 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_salivarius 1
p__Firmicutes;c__Bacilli;o__Staphylococcales 21
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae 21
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus 21
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_epidermidis 15
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_hominis 3
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_warneri 3
p__Firmicutes;c__Clostridia 37
p__Firmicutes;c__Clostridia;o__Lachnospirales 1
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae 1
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum 1
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum_saburreum 1
p__Firmicutes;c__Clostridia;o__Tissierellales 36
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae 25
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Anaerococcus 19
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Anaerococcus;s__Anaerococcus_octavius 19
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Finegoldia 6
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Finegoldia;s__Finegoldia_magna 6
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae 11
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus 11
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus;s__Peptoniphilus_harei 1
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus;s__Peptoniphilus_rhinitidis 10
p__Firmicutes;c__Negativicutes 7
p__Firmicutes;c__Negativicutes;o__Veillonellales 7
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae 1
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus 1
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus_sp900240295 1
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae 6
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella 6
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_atypica 1
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_dispar 2
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_parvula 3
p__Fusobacteriota 4
p__Fusobacteriota;c__Fusobacteriia 4
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales 4
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae 4
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia 4
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia_hofstadii 1
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia_sp001274535 1
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia_wadei 2
p__Myxococcota 2
p__Myxococcota;c__Myxococcia 2
p__Myxococcota;c__Myxococcia;o__Myxococcales 2
p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae 2
p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__Anaeromyxobacter 2
p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__Anaeromyxobacter;s__Anaeromyxobacter_dehalogenans 1
p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__Anaeromyxobacter;s__Anaeromyxobacter_sp000964525 1
p__Proteobacteria 12992
p__Proteobacteria;c__Alphaproteobacteria 6
p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales 1
p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae 1
p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella 1
p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella;s__Reyranella_sp900110395 1
p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales 5
p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae 4
p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium 4
p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium;s__Hyphomicrobium_zavarzinii 4
p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae 1
p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Rhodopseudomonas 1
p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Rhodopseudomonas;s__Rhodopseudomonas_sp001295845 1
p__Proteobacteria;c__Gammaproteobacteria 12986
p__Proteobacteria;c__Gammaproteobacteria;o__Berkiellales 1
p__Proteobacteria;c__Gammaproteobacteria;o__Berkiellales;f__Berkiellaceae 1
p__Proteobacteria;c__Gammaproteobacteria;o__Berkiellales;f__Berkiellaceae;g__Berkiella 1
p__Proteobacteria;c__Gammaproteobacteria;o__Berkiellales;f__Berkiellaceae;g__Berkiella;s__Berkiella_aquae 1
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 8
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 5
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium 2
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium;s__Aquabacterium_sp000768065 2
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia 1
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia;s__Paraburkholderia_oxyphila 1
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia 2
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;s__Ralstonia_sp001078575 2
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae 1
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria 1
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria_subflava 1
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae 2
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera 2
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera;s__Thauera_chlorobenzoica 2
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 3
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea;s__Pantoea_ananatis 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae 2
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus 2
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus_parainfluenzae 2
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales 12974
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae 12974
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter 2
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter_baumannii 2
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella 12972
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella_aerosaccus 1
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella_nonliquefaciens 12971

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