Project

Run - SRR12647614

Project PRJNA663638
Sample SAMN16174917
Experiment SRX9128909
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,230.4 2,399.4
Mean read quality 45.6 45.3
Median read length 2,179.0 2,360.0
Median read quality 37.7 38.0
Number of reads 1,779.0 569.0
Read length N50 2,179.0 2,361.0
STDEV read length 234.2 127.4
Total bases 3,967,860.0 1,365,282.0
Before filtering After filtering(length/quality)
#Name SRR12647614_filt.fastq
p__Actinobacteriota 7
p__Actinobacteriota;c__Actinobacteria 5
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 1
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae 1
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium 1
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium_pseudolongum 1
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales 2
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae 2
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus 2
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus;s__Rhodococcus_erythropolis 1
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus;s__Rhodococcus_sp002259485 1
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales 2
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae 2
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium 2
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_acnes 2
p__Actinobacteriota;c__Coriobacteriia 2
p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales 2
p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae 2
p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Adlercreutzia 2
p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Adlercreutzia;s__Adlercreutzia_caecimuris 1
p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Adlercreutzia;s__Adlercreutzia_equolifaciens 1
p__Bacteroidota 22
p__Bacteroidota;c__Bacteroidia 22
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales 22
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae 22
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-873 2
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-873;s__CAG-873_sp001701165 2
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella 14
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella;s__Duncaniella_sp001689575 3
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella;s__Duncaniella_sp002492665 11
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Muribaculum 6
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Muribaculum;s__Muribaculum_intestinale 6
p__Firmicutes 417
p__Firmicutes;c__Bacilli 413
p__Firmicutes;c__Bacilli;o__Erysipelotrichales 12
p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelatoclostridiaceae 12
p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelatoclostridiaceae;g__Coprobacillus 2
p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelatoclostridiaceae;g__Coprobacillus;s__Coprobacillus_cateniformis 2
p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelatoclostridiaceae;g__Erysipelatoclostridium 2
p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelatoclostridiaceae;g__Erysipelatoclostridium;s__Erysipelatoclostridium_ramosum 2
p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelatoclostridiaceae;g__KLE1796 8
p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelatoclostridiaceae;g__KLE1796;s__KLE1796_sp001580115 8
p__Firmicutes;c__Bacilli;o__Haloplasmatales 245
p__Firmicutes;c__Bacilli;o__Haloplasmatales;f__Turicibacteraceae 245
p__Firmicutes;c__Bacilli;o__Haloplasmatales;f__Turicibacteraceae;g__Turicibacter 245
p__Firmicutes;c__Bacilli;o__Haloplasmatales;f__Turicibacteraceae;g__Turicibacter;s__Turicibacter_sp001543345 245
p__Firmicutes;c__Bacilli;o__Lactobacillales 154
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae 9
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus 9
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus_faecalis 9
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae 143
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus 143
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus_johnsonii 143
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae 2
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus 2
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_sanguinis 2
p__Firmicutes;c__Bacilli;o__RF39 2
p__Firmicutes;c__Bacilli;o__RF39;f__CAG-1000 2
p__Firmicutes;c__Bacilli;o__RF39;f__CAG-1000;g__CAG-776 2
p__Firmicutes;c__Bacilli;o__RF39;f__CAG-1000;g__CAG-776;s__CAG-776_sp000438195 2
p__Firmicutes;c__Clostridia 4
p__Firmicutes;c__Clostridia;o__Acetivibrionales 1
p__Firmicutes;c__Clostridia;o__Acetivibrionales;f__Acetivibrionaceae 1
p__Firmicutes;c__Clostridia;o__Acetivibrionales;f__Acetivibrionaceae;g__Ruminiclostridium 1
p__Firmicutes;c__Clostridia;o__Acetivibrionales;f__Acetivibrionaceae;g__Ruminiclostridium;s__Ruminiclostridium_sp001717745 1
p__Firmicutes;c__Clostridia;o__Clostridiales 1
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 1
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium 1
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_perfringens 1
p__Firmicutes;c__Clostridia;o__Lachnospirales 1
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae 1
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-95 1
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-95;s__CAG-95_sp000403495 1
p__Firmicutes;c__Clostridia;o__Oscillospirales 1
p__Firmicutes;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae 1
p__Firmicutes;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__ER4 1
p__Firmicutes;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__ER4;s__ER4_sp000765235 1
p__Proteobacteria 118
p__Proteobacteria;c__Gammaproteobacteria 118
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 54
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 54
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 54
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 54
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 64
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 64
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter 64
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_himalayensis 64

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