Project

Project - PRJDB10841

Analysis of the equine gut microbe using 16S-ITS-23S rRNA operon amplicon sequencing

Descriptions

This study was carried out to construct a metagenomic methodology by using 16S-ITS-23S rRNA operon region and to evaluate the amplicon sequencing with the operon region for the equine gut microbiota, comparing with amplicon sequencing with full-length 16S rRNA gene and shotgun sequencing.

External Links

ENA website

NCBI website

Publication

Establishment and Assessment of An Amplicon Sequencing Method Targeting The 16S-ITS-23S rRNA Operon For Analysis of The Equine Gut Microbiome
Yuta Kinoshita, et al. 2021

Runs 11

Sample Accession Run Accession Scientific Name Instrument Platform Instrument Model Library Name
SAMD00260421 DRR258828 synthetic metagenome Oxford Nanopore MinION mock_LongAmp_rrn_operon
SAMD00260421 DRR258830 synthetic metagenome Oxford Nanopore MinION mock_KAPA2G_rrn_operon
SAMD00260422 DRR258832 gut metagenome Oxford Nanopore MinION Horse_A_rrn_operon
SAMD00260422 DRR277541 gut metagenome Oxford Nanopore MinION Horse_A_rrn_operon_No.2
SAMD00260422 DRR277544 gut metagenome Oxford Nanopore MinION Horse_A_rrn_operon_No.3
SAMD00260423 DRR258835 gut metagenome Oxford Nanopore MinION Horse_S_rrn_operon
SAMD00260423 DRR277542 gut metagenome Oxford Nanopore MinION Horse_S_rrn_operon_No.2
SAMD00260423 DRR277545 gut metagenome Oxford Nanopore MinION Horse_S_rrn_operon_No.3
SAMD00260424 DRR258838 gut metagenome Oxford Nanopore MinION Horse_L_rrn_operon
SAMD00260424 DRR277543 gut metagenome Oxford Nanopore MinION Horse_L_rrn_operon_No.2
SAMD00260424 DRR277546 gut metagenome Oxford Nanopore MinION Horse_L_rrn_operon_No.3

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