Project

Run - SRR8029997

Project PRJNA495486
Sample SAMN10219882
Experiment SRX4862627
Instrument Platform Oxford Nanopore
Instrument Model MinION
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRGTTTGATYHTGGCT
Reverse primer: ACCRCCCCAGTHAAACT
Before filtering After filtering(length/quality)
Mean read length 3,897.9 4,169.4
Mean read quality 10.3 10.4
Median read length 4,155.0 4,165.0
Median read quality 10.5 10.5
Number of reads 17,253.0 15,152.0
Read length N50 4,162.0 4,167.0
STDEV read length 820.1 116.2
Total bases 67,250,688.0 63,174,137.0
Before filtering After filtering(length/quality)
#Name SRR8029997.paf
p__Firmicutes 15041
p__Firmicutes;c__Bacilli 15041
p__Firmicutes;c__Bacilli;o__Lactobacillales 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus_fermentum 1
p__Firmicutes;c__Bacilli;o__Staphylococcales 15040
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae 15040
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus 15040
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_aureus 1
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_delphini 8
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_intermedius 2
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_pseudintermedius 15029

  • QC

NanoPlot Before zip
After zip

  • Taxonomic profiling

Plot Krona html
Pie zip
Abundance table Plain txt
Mpa version txt

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