Project

Run - SRR10080686

Project PRJNA564314
Sample SAMN12703391
Experiment SRX6813721
Instrument Platform Oxford Nanopore
Instrument Model MinION
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGAGTTTGATCCTGGCTCAG
Reverse primer: ACCGCCCCAGTHAAACT
Before filtering After filtering(length/quality)
Mean read length 4,224.0 4,222.6
Mean read quality 10.3 10.3
Median read length 4,258.0 4,258.0
Median read quality 10.4 10.4
Number of reads 9,768.0 9,755.0
Read length N50 4,259.0 4,259.0
STDEV read length 126.1 120.0
Total bases 41,260,450.0 41,191,941.0
Before filtering After filtering(length/quality)
#Name SRR10080686.paf
p__Bacteroidota 15
p__Bacteroidota;c__Bacteroidia 15
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales 15
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae 15
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella 1
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella;s__Alloprevotella_rava 1
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__F0040 1
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__F0040;s__F0040_sp900095835 1
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella 13
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella_melaninogenica 12
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella_oris 1
p__Campylobacterota 7
p__Campylobacterota;c__Campylobacteria 7
p__Campylobacterota;c__Campylobacteria;o__Campylobacterales 7
p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae 3
p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter 3
p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter_concisus 3
p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae 4
p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__Sulfuricurvum 4
p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__Sulfuricurvum;s__Sulfuricurvum_kujiense 2
p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__Sulfuricurvum;s__Sulfuricurvum_sp000310245 2
p__Firmicutes 67
p__Firmicutes;c__Bacilli 30
p__Firmicutes;c__Bacilli;o__Erysipelotrichales 1
p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae 1
p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Solobacterium 1
p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Solobacterium;s__Solobacterium_moorei 1
p__Firmicutes;c__Bacilli;o__Lactobacillales 28
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus_paracasei 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae 27
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus 27
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_infantis 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_parasanguinis 6
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_pneumoniae 6
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_sp000411475 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_sp001556435 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_thermophilus 12
p__Firmicutes;c__Bacilli;o__Staphylococcales 1
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Gemellaceae 1
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella 1
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella_sanguinis 1
p__Firmicutes;c__Clostridia 1
p__Firmicutes;c__Clostridia;o__Tissierellales 1
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae 1
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Parvimonas 1
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Parvimonas;s__Parvimonas_sp000214475 1
p__Firmicutes;c__Negativicutes 36
p__Firmicutes;c__Negativicutes;o__Selenomonadales 3
p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae 3
p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda 3
p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda_sp001189555 2
p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda_sp001717585 1
p__Firmicutes;c__Negativicutes;o__Veillonellales 33
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae 1
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus 1
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus_sp900240295 1
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae 32
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella 32
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_atypica 15
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_dispar 8
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_parvula 9
p__Fusobacteriota 19
p__Fusobacteriota;c__Fusobacteriia 19
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales 19
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae 19
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium 19
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium_periodonticum 1
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium_polymorphum 1
p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium_vincentii 17
p__Proteobacteria 9558
p__Proteobacteria;c__Gammaproteobacteria 9558
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 3
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 1
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia 1
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia;s__Paraburkholderia_eburnea 1
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae 2
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria 2
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria_mucosa 1
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria_sp000186165 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 3
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae 3
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus 3
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus_parahaemolyticus 2
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus_parainfluenzae 1
p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales 1
p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae 1
p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylobacter 1
p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylobacter;s__Methylobacter_tundripaludum 1
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales 9286
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae 9286
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas 9286
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas_aeruginosa 9286
p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales 265
p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae 265
p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas 265
p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas_geniculata 4
p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas_maltophilia 261

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