Project

Run - SRR12647611

Project PRJNA663638
Sample SAMN16174923
Experiment SRX9128912
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,569.6 2,588.8
Mean read quality 43.2 42.6
Median read length 2,712.0 2,716.0
Median read quality 36.6 36.5
Number of reads 2,072.0 1,941.0
Read length N50 2,719.0 2,719.0
STDEV read length 363.5 163.7
Total bases 5,324,155.0 5,024,885.0
Before filtering After filtering(length/quality)
#Name SRR12647611_filt.fastq
p__Actinobacteriota 49
p__Actinobacteriota;c__Actinobacteria 49
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 2
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae 2
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia 2
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia_radingae 2
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales 47
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae 47
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium 47
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_acnes 25
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_avidum 22
p__Bacteroidota 1
p__Bacteroidota;c__Bacteroidia 1
p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales 1
p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae 1
p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga 1
p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga_granulosa 1
p__Firmicutes 150
p__Firmicutes;c__Bacilli 10
p__Firmicutes;c__Bacilli;o__Bacillales 2
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae 2
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus 2
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus_oceanisediminis 2
p__Firmicutes;c__Bacilli;o__Lactobacillales 8
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae 8
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus 8
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus_faecalis 8
p__Firmicutes;c__Clostridia 139
p__Firmicutes;c__Clostridia;o__Peptostreptococcales 133
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae 133
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides 133
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides;s__Clostridioides_difficile 133
p__Firmicutes;c__Clostridia;o__Tissierellales 6
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae 6
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Anaerococcus 6
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Anaerococcus;s__Anaerococcus_hydrogenalis 1
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Anaerococcus;s__Anaerococcus_rubeinfantis 5
p__Firmicutes;c__Negativicutes 1
p__Firmicutes;c__Negativicutes;o__Selenomonadales 1
p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae 1
p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda 1
p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda_sp001717585 1
p__Proteobacteria 1738
p__Proteobacteria;c__Gammaproteobacteria 1738
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 1093
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 1093
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 1093
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 1093
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 645
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 645
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter 644
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_cloacae 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_himalayensis 643
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_coli 1

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  • Taxonomic profiling

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