Project

Run - SRR12647610

Project PRJNA663638
Sample SAMN16174924
Experiment SRX9128913
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,570.4 2,598.0
Mean read quality 43.2 43.1
Median read length 2,717.0 2,719.0
Median read quality 37.0 37.1
Number of reads 1,209.0 1,137.0
Read length N50 2,720.0 2,721.0
STDEV read length 303.4 163.3
Total bases 3,107,655.0 2,953,935.0
Before filtering After filtering(length/quality)
#Name SRR12647610_filt.fastq
p__Actinobacteriota 4
p__Actinobacteriota;c__Actinobacteria 4
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 4
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae 4
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia 4
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia_radingae 4
p__Bacteroidota 1
p__Bacteroidota;c__Bacteroidia 1
p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales 1
p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae 1
p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium 1
p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium;s__Flavobacterium_sp001507425 1
p__Firmicutes 105
p__Firmicutes;c__Bacilli 14
p__Firmicutes;c__Bacilli;o__Lactobacillales 14
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae 14
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus 14
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus_faecalis 14
p__Firmicutes;c__Clostridia 70
p__Firmicutes;c__Clostridia;o__Peptostreptococcales 68
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae 68
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides 68
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides;s__Clostridioides_difficile 68
p__Firmicutes;c__Clostridia;o__Tissierellales 2
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae 2
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Anaerococcus 2
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Anaerococcus;s__Anaerococcus_hydrogenalis 1
p__Firmicutes;c__Clostridia;o__Tissierellales;f__Helcococcaceae;g__Anaerococcus;s__Anaerococcus_rubeinfantis 1
p__Firmicutes;c__Negativicutes 21
p__Firmicutes;c__Negativicutes;o__Veillonellales 21
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae 21
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella 21
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_parvula 20
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_rogosae 1
p__Proteobacteria 1019
p__Proteobacteria;c__Gammaproteobacteria 1019
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 664
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 664
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 664
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 664
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 355
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 355
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter 353
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_himalayensis 353
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_flexneri 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_pneumoniae 1

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