Project

Run - SRR12647607

Project PRJNA663638
Sample SAMN16174929
Experiment SRX9128916
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,356.1 2,430.8
Mean read quality 35.3 34.0
Median read length 2,421.0 2,422.0
Median read quality 32.2 31.9
Number of reads 3,764.0 3,380.0
Read length N50 2,422.0 2,422.0
STDEV read length 358.3 95.8
Total bases 8,868,205.0 8,216,045.0
Before filtering After filtering(length/quality)
#Name SRR12647607_filt.fastq
p__Actinobacteriota 1
p__Actinobacteriota;c__Actinobacteria 1
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales 1
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae 1
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium 1
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium_kefirresidentii 1
p__Firmicutes 9
p__Firmicutes;c__Bacilli 9
p__Firmicutes;c__Bacilli;o__Lactobacillales 8
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae 8
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus 8
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus_faecalis 8
p__Firmicutes;c__Bacilli;o__Staphylococcales 1
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae 1
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus 1
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_epidermidis 1
p__Proteobacteria 3349
p__Proteobacteria;c__Gammaproteobacteria 3349
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 97
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 97
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 97
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 97
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 3252
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 3252
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter 2730
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_cloacae 2728
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_kobei 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_nimipressuralis 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia 12
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_coli 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_flexneri 11
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella 510
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_michiganensis 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_pneumoniae 400
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_quasipneumoniae 107
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_quasivariicola 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_variicola 1

  • QC

NanoPlot Before zip
After zip

  • Taxonomic profiling

Plot Krona html
Pie zip
Abundance table Plain txt
Mpa version txt